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[{"vid":"114","uid":"1","title":"MindSeer","log":"","status":"1","comment":"1","promote":"0","sticky":"0","vuuid":"f6f00d1a-b73f-a494-b975-ae9019e34f55","nid":"64","type":"project","language":"und","created":"1381326978","changed":"1499119919","tnid":"0","translate":"0","uuid":"96b09b16-4b6d-bb44-6d9d-4d4365aec2e4","revision_timestamp":"1499119919","revision_uid":"1","body":{"und":[{"value":"\u003Cspan style=\u0022padding-right: 20px;\u0022 class=\u0022inline inline-left\u0022\u003E\u003Cimg src=\u0022sites\/default\/files\/images\/mindseer_scene3.1.project.png\u0022 alt=\u0022\u0022 title=\u0022\u0022 class=\u0022image image-project \u0022 width=\u0022300\u0022 height=\u0022320\u0022 \/\u003E\u003C\/span\u003E\r\n\r\n\u003Ch2\u003EOverview\u003C\/h2\u003E\r\n\r\n\u003Cb\u003EMindSeer\u003C\/b\u003E is a visualization tool for multi-modality neuroimaging data. It supports basic data management capabilities, visualization of 3D surfaces (SPM\u0027s output or OFF files), volumes (Analyze, NIFTI or Minc) and label sets.\r\n\r\nFor usage instructions and examples, see the \u003Ca href=\u0022\/projects\/mindseer\/tutorials\u0022\u003EMindSeer tutorials\u003C\/a\u003E.\r\n\r\nIf you are using MindSeer in your work, please let us know and cite the following reference: Moore EB, Poliakov AV, Lincoln P, and Brinkley JF, \u003Cstrong\u003EMindSeer: a portable and extensible tool for visualization of structural and functional neuroimaging data\u003C\/strong\u003E. \u003Ccite\u003EBMC Bioinformatics\u003C\/cite\u003E 2007 8:389 \u003Ca href=\u0022http:\/\/dx.doi.org\/10.1186\/1471-2105-8-389\u0022\u003Edoi:10.1186\/1471-2105-8-389\u003C\/a\u003E.\r\n\r\nMindSeer has 2 different modes:\r\n\r\n\u003Cdiv style=\u0022margin-left: 320px;\u0022\u003E\r\n\u003Col\u003E\r\n \u003Cli\u003EClient\/Server is designed to allow users to visualize data that is stored centrally and enhance collaboration.\u003C\/li\u003E\r\n \u003Cli\u003EStandalone mode is available to view local data and is built for more performance than Client\/Server.\u003C\/li\u003E\r\n\u003C\/ol\u003E\r\n\u003C\/div\u003E\r\n\r\nBoth modes have the same interface and support the same features.\r\n\r\nIt has a modular architecture and is designed to be extensible.\u0026nbsp; It is released under the \u003Ca href=\u0022\/projects\/mindseer\/license#GPL\u0022\u003EGPL\u003C\/a\u003E with some \u003Ca href=\u0022\/projects\/mindseer\/license#LGPL\u0022\u003ELGPL\u003C\/a\u003E components (MatFile and NIFTI jar files).\r\n\r\n\u003Ch2\u003ERequirements\u003C\/h2\u003E\r\n\r\n\u003Col\u003E\r\n \u003Cli\u003EJava 5.0 or above.\u003C\/li\u003E\r\n \u003Cli\u003EJava Web Start.\u003C\/li\u003E\r\n \u003Cli\u003EJava3D (installed automatically by Web Start).\u003C\/li\u003E\r\n\u003C\/ol\u003E\r\n\r\n\u003Ch2\u003EOutside Uses\u003C\/h2\u003E\r\n\r\n\u003Cul\u003E\r\n \u003Cli\u003EVersion 1.1 added support for atlases! Here is an example of BrainInfo\u0027s monkey atlas: \u003Ca class=\u0022ext-link\u0022 href=\u0022http:\/\/128.95.153.28\/%7Eeider\/PuzzleAtlas.html\u0022\u003E\u003Cspan class=\u0022icon\u0022\u003E\u003C\/span\u003EPuzzle Atlas\u003C\/a\u003E\u003C\/li\u003E\r\n \u003Cli\u003EProject Wonderland at Sun has incorporated MindSeer into a demo of the \u0022Science Playground\u0022: \u003Ca class=\u0022ext-link\u0022 href=\u0022http:\/\/blogs.sun.com\/wonderland\/entry\/this_is_your_brain_in\u0022\u003E\u003Cspan class=\u0022icon\u0022\u003E\u003C\/span\u003EThis is your brain in Wonderland\u003C\/a\u003E\u003C\/li\u003E\r\n\u003C\/ul\u003E\r\n\r\n","summary":"\u003Cspan style=\u0022padding-right: 20px;\u0022 class=\u0022inline inline-left\u0022\u003E\u003Cimg src=\u0022\/system\/files\/images\/mindseer_scene3.1.project.png\u0022 alt=\u0022\u0022 title=\u0022\u0022 class=\u0022image image-project \u0022 width=\u0022300\u0022 height=\u0022320\u0022 \/\u003E\u003C\/span\u003E\r\n\r\n\u003Ch2\u003EOverview\u003C\/h2\u003E\r\n\r\n\u003Cb\u003EMindSeer\u003C\/b\u003E is a visualization tool for multi-modality neuroimaging data. It supports basic data management capabilities, visualization of 3D surfaces (SPM\u0027s output or OFF files), volumes (Analyze, NIFTI or Minc) and label sets.\r\n\r\nFor usage instructions and examples, see the \u003Ca href=\u0022\/projects\/mindseer\/tutorials\u0022\u003EMindSeer tutorials\u003C\/a\u003E.\r\n\r\n","format":"full_html","safe_value":"\u003Cp\u003E\u003Cspan style=\u0022padding-right: 20px;\u0022 class=\u0022inline inline-left\u0022\u003E\u003Cimg src=\u0022http:\/\/si.washington.edu\/sites\/default\/files\/images\/mindseer_scene3.1.project.png\u0022 alt=\u0022\u0022 title=\u0022\u0022 class=\u0022image image-project \u0022 width=\u0022300\u0022 height=\u0022320\u0022 \/\u003E\u003C\/span\u003E\u003C\/p\u003E\n\u003Ch2\u003EOverview\u003C\/h2\u003E\n\u003Cp\u003E\u003Cb\u003EMindSeer\u003C\/b\u003E is a visualization tool for multi-modality neuroimaging data. It supports basic data management capabilities, visualization of 3D surfaces (SPM\u0027s output or OFF files), volumes (Analyze, NIFTI or Minc) and label sets.\u003C\/p\u003E\n\u003Cp\u003EFor usage instructions and examples, see the \u003Ca href=\u0022http:\/\/si.washington.edu\/projects\/mindseer\/tutorials\u0022\u003EMindSeer tutorials\u003C\/a\u003E.\u003C\/p\u003E\n\u003Cp\u003EIf you are using MindSeer in your work, please let us know and cite the following reference: Moore EB, Poliakov AV, Lincoln P, and Brinkley JF, \u003Cstrong\u003EMindSeer: a portable and extensible tool for visualization of structural and functional neuroimaging data\u003C\/strong\u003E. \u003Ccite\u003EBMC Bioinformatics\u003C\/cite\u003E 2007 8:389 \u003Ca href=\u0022http:\/\/dx.doi.org\/10.1186\/1471-2105-8-389\u0022\u003Edoi:10.1186\/1471-2105-8-389\u003C\/a\u003E.\u003C\/p\u003E\n\u003Cp\u003EMindSeer has 2 different modes:\u003C\/p\u003E\n\u003Cdiv style=\u0022margin-left: 320px;\u0022\u003E\n\u003Col\u003E\n\u003Cli\u003EClient\/Server is designed to allow users to visualize data that is stored centrally and enhance collaboration.\u003C\/li\u003E\n\u003Cli\u003EStandalone mode is available to view local data and is built for more performance than Client\/Server.\u003C\/li\u003E\n\u003C\/ol\u003E\n\u003C\/div\u003E\n\u003Cp\u003EBoth modes have the same interface and support the same features.\u003C\/p\u003E\n\u003Cp\u003EIt has a modular architecture and is designed to be extensible.\u00a0 It is released under the \u003Ca href=\u0022http:\/\/si.washington.edu\/projects\/mindseer\/license#GPL\u0022\u003EGPL\u003C\/a\u003E with some \u003Ca href=\u0022http:\/\/si.washington.edu\/projects\/mindseer\/license#LGPL\u0022\u003ELGPL\u003C\/a\u003E components (MatFile and NIFTI jar files).\u003C\/p\u003E\n\u003Ch2\u003ERequirements\u003C\/h2\u003E\n\u003Col\u003E\n\u003Cli\u003EJava 5.0 or above.\u003C\/li\u003E\n\u003Cli\u003EJava Web Start.\u003C\/li\u003E\n\u003Cli\u003EJava3D (installed automatically by Web Start).\u003C\/li\u003E\n\u003C\/ol\u003E\n\u003Ch2\u003EOutside Uses\u003C\/h2\u003E\n\u003Cul\u003E\n\u003Cli\u003EVersion 1.1 added support for atlases! Here is an example of BrainInfo\u0027s monkey atlas: \u003Ca class=\u0022ext-link\u0022 href=\u0022http:\/\/128.95.153.28\/%7Eeider\/PuzzleAtlas.html\u0022\u003E\u003Cspan class=\u0022icon\u0022\u003E\u003C\/span\u003EPuzzle Atlas\u003C\/a\u003E\u003C\/li\u003E\n\u003Cli\u003EProject Wonderland at Sun has incorporated MindSeer into a demo of the \u0022Science Playground\u0022: \u003Ca class=\u0022ext-link\u0022 href=\u0022http:\/\/blogs.sun.com\/wonderland\/entry\/this_is_your_brain_in\u0022\u003E\u003Cspan class=\u0022icon\u0022\u003E\u003C\/span\u003EThis is your brain in Wonderland\u003C\/a\u003E\u003C\/li\u003E\n\u003C\/ul\u003E\n","safe_summary":"\u003Cp\u003E\u003Cspan style=\u0022padding-right: 20px;\u0022 class=\u0022inline inline-left\u0022\u003E\u003Cimg src=\u0022http:\/\/si.washington.edu\/system\/files\/images\/mindseer_scene3.1.project.png\u0022 alt=\u0022\u0022 title=\u0022\u0022 class=\u0022image image-project \u0022 width=\u0022300\u0022 height=\u0022320\u0022 \/\u003E\u003C\/span\u003E\u003C\/p\u003E\n\u003Ch2\u003EOverview\u003C\/h2\u003E\n\u003Cp\u003E\u003Cb\u003EMindSeer\u003C\/b\u003E is a visualization tool for multi-modality neuroimaging data. It supports basic data management capabilities, visualization of 3D surfaces (SPM\u0027s output or OFF files), volumes (Analyze, NIFTI or Minc) and label sets.\u003C\/p\u003E\n\u003Cp\u003EFor usage instructions and examples, see the \u003Ca href=\u0022http:\/\/si.washington.edu\/projects\/mindseer\/tutorials\u0022\u003EMindSeer tutorials\u003C\/a\u003E.\u003C\/p\u003E\n"}]},"field_short_description":[],"field_long_description":[],"field_project_status":{"und":[{"tid":"11"}]},"field_project_lead":[],"field_project_members":[],"field_informatics_research_areas":[],"field_biomedical_domains":[],"field_project_image":[],"field_related_projects":[],"field_funding_sources":[],"field_service_or_application":{"und":[{"target_id":"188"}]},"field_project_tag":{"und":[{"tid":"102"}]},"field_publications":[],"path":{"pid":"73","source":"node\/64","alias":"content\/mindseer","language":"und"},"cid":"0","last_comment_timestamp":"1381326978","last_comment_name":null,"last_comment_uid":"1","comment_count":"0","name":"drupal","picture":"0","data":"b:0;","menu":null,"node_export_drupal_version":"7","node_export_book":{"#book_uuid":"96b09b16-4b6d-bb44-6d9d-4d4365aec2e4","weight":0,"#is_root":true},"#node_export_object":"1"}]
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