Node export of Anatomy Engine Demo

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Todd has replaced some of these queries with direct queries to the FMA SPARQL endpoint, but not all. In particular 1)  Query fragments added in the Scene Builder return no results , 2) Data Visualizer queries retrieve no data, and 4) none of the tutoring components are ported. The screenshots below show the Scene Builder working with a query fragment (articulations of the sphenoid bone). The main tool of use in the ported version is the Anatomy Explorer.","summary":"","format":"filtered_html","safe_value":"\u003Cp\u003EThis is a partial port of Trond Nilsen\u0027s Anatomy Engine code, which was running at\u003Cbr \/\u003E\n\u003Ca href=\u0022http:\/\/ethmoid2.biostr.washington.edu:8080\/SIG-SceneGen\u0022\u003Ehttp:\/\/ethmoid2.biostr.washington.edu:8080\/SIG-SceneGen\u003C\/a\u003E. There are several components to the Anatomy Engine demo:\u003Cbr \/\u003E\n1. Scene Builder\u003Cbr \/\u003E\n2. Data Visualizer\u003Cbr \/\u003E\n3. Anatomy Explorer\u003Cbr \/\u003E\n4. Tutoring related components.\u003C\/p\u003E\n\u003Cp\u003ETodd has ported many of these components to synapse, but not all. The main elements not ported (yet) are those which contact saved queries in the Query Integrator (QI) since we are not currently porting the QI to synapse. Todd has replaced some of these queries with direct queries to the FMA SPARQL endpoint, but not all. In particular 1)  Query fragments added in the Scene Builder return no results , 2) Data Visualizer queries retrieve no data, and 4) none of the tutoring components are ported. The screenshots below show the Scene Builder working with a query fragment (articulations of the sphenoid bone). The main tool of use in the ported version is the Anatomy Explorer.\u003C\/p\u003E\n","safe_summary":""}]},"field_demo_url":{"und":[{"value":"http:\/\/synapse.si.washington.edu:8080\/SIG-SceneGen","format":"filtered_html","safe_value":"\u003Cp\u003E\u003Ca href=\u0022http:\/\/synapse.si.washington.edu:8080\/SIG-SceneGen\u0022\u003Ehttp:\/\/synapse.si.washington.edu:8080\/SIG-SceneGen\u003C\/a\u003E\u003C\/p\u003E\n"}]},"field_demo_status":{"und":[{"tid":"26"}]},"field_associated_project":{"und":[{"target_id":"79"}]},"field_runs_on":{"und":[{"target_id":"233"}]},"field_screenshots":[],"field_images_captions":{"und":[{"value":"70","revision_id":"70","field_collection":{"\u0000*\u0000fieldInfo":null,"\u0000*\u0000hostEntity":{"vid":"340","uid":"1","title":"Anatomy Engine Demo","log":"","status":"1","comment":"1","promote":"1","sticky":"0","vuuid":"13aa76bc-b9bb-4a38-bf65-3a800d9889ad","nid":"163","type":"service","language":"und","created":"1435788433","changed":"1641503766","tnid":"0","translate":"0","uuid":"ec8ffce8-2086-4fd6-be18-11fc3b3f3444","revision_timestamp":"1641503766","revision_uid":"2","body":{"und":[{"value":"This is a partial port of Trond Nilsen\u0027s Anatomy Engine code, which was running at\r\nhttp:\/\/ethmoid2.biostr.washington.edu:8080\/SIG-SceneGen. There are several components to the Anatomy Engine demo:\r\n1. Scene Builder\r\n2. Data Visualizer\r\n3. Anatomy Explorer\r\n4. Tutoring related components.\r\n\r\nTodd has ported many of these components to synapse, but not all. The main elements not ported (yet) are those which contact saved queries in the Query Integrator (QI) since we are not currently porting the QI to synapse. Todd has replaced some of these queries with direct queries to the FMA SPARQL endpoint, but not all. In particular 1)  Query fragments added in the Scene Builder return no results , 2) Data Visualizer queries retrieve no data, and 4) none of the tutoring components are ported. The screenshots below show the Scene Builder working with a query fragment (articulations of the sphenoid bone). The main tool of use in the ported version is the Anatomy Explorer.","summary":"","format":"filtered_html","safe_value":"\u003Cp\u003EThis is a partial port of Trond Nilsen\u0027s Anatomy Engine code, which was running at\u003Cbr \/\u003E\n\u003Ca href=\u0022http:\/\/ethmoid2.biostr.washington.edu:8080\/SIG-SceneGen\u0022\u003Ehttp:\/\/ethmoid2.biostr.washington.edu:8080\/SIG-SceneGen\u003C\/a\u003E. There are several components to the Anatomy Engine demo:\u003Cbr \/\u003E\n1. Scene Builder\u003Cbr \/\u003E\n2. Data Visualizer\u003Cbr \/\u003E\n3. Anatomy Explorer\u003Cbr \/\u003E\n4. Tutoring related components.\u003C\/p\u003E\n\u003Cp\u003ETodd has ported many of these components to synapse, but not all. The main elements not ported (yet) are those which contact saved queries in the Query Integrator (QI) since we are not currently porting the QI to synapse. Todd has replaced some of these queries with direct queries to the FMA SPARQL endpoint, but not all. In particular 1)  Query fragments added in the Scene Builder return no results , 2) Data Visualizer queries retrieve no data, and 4) none of the tutoring components are ported. The screenshots below show the Scene Builder working with a query fragment (articulations of the sphenoid bone). The main tool of use in the ported version is the Anatomy Explorer.\u003C\/p\u003E\n","safe_summary":""}]},"field_demo_url":{"und":[{"value":"http:\/\/synapse.si.washington.edu:8080\/SIG-SceneGen","format":"filtered_html","safe_value":"\u003Cp\u003E\u003Ca href=\u0022http:\/\/synapse.si.washington.edu:8080\/SIG-SceneGen\u0022\u003Ehttp:\/\/synapse.si.washington.edu:8080\/SIG-SceneGen\u003C\/a\u003E\u003C\/p\u003E\n"}]},"field_demo_status":{"und":[{"tid":"26"}]},"field_associated_project":{"und":[{"target_id":"79"}]},"field_runs_on":{"und":[{"target_id":"233"}]},"field_screenshots":[],"field_images_captions":{"und":[{"value":"70","revision_id":"70"},{"value":"71","revision_id":"71"},{"value":"72","revision_id":"72"},{"value":"73","revision_id":"73"},{"value":"74","revision_id":"74"},{"value":"75","revision_id":"75"},{"value":"76","revision_id":"76"},{"value":"77","revision_id":"77"},{"value":"78","revision_id":"78"},{"value":"79","revision_id":"79"},{"value":"80","revision_id":"80"},{"value":"81","revision_id":"81"},{"value":"82","revision_id":"82"}]},"field_software":{"und":[{"value":"http:\/\/resources.si.washington.edu\/viewvc\/svnroot\/SceneGen\/","format":"filtered_html","safe_value":"\u003Cp\u003E\u003Ca href=\u0022http:\/\/resources.si.washington.edu\/viewvc\/svnroot\/SceneGen\/\u0022\u003Ehttp:\/\/resources.si.washington.edu\/viewvc\/svnroot\/SceneGen\/\u003C\/a\u003E\u003C\/p\u003E\n"}]},"field_slides":[],"field_server_directory":{"und":[{"value":"\/var\/lib\/tomcat\/webapps\/SIG-SceneGen","format":null,"safe_value":"\/var\/lib\/tomcat\/webapps\/SIG-SceneGen"},{"value":"\/usr\/local\/scenegen","format":null,"safe_value":"\/usr\/local\/scenegen"}]},"field_short_description":[],"path":{"pathauto":"1"},"cid":"0","last_comment_timestamp":"1435788433","last_comment_name":null,"last_comment_uid":"1","comment_count":"0","name":"drupal","picture":"0","data":"b:0;","menu":{"link_title":"","mlid":0,"plid":0,"menu_name":"main-menu","weight":0,"options":[],"module":"menu","expanded":0,"hidden":0,"has_children":0,"customized":0,"parent_depth_limit":8},"#node_export_object":"1"},"\u0000*\u0000hostEntityId":163,"\u0000*\u0000hostEntityRevisionId":false,"\u0000*\u0000hostEntityType":"node","\u0000*\u0000langcode":"und","item_id":"70","revision_id":"70","field_name":"field_images_captions","default_revision":"1","archived":"0","\u0000*\u0000entityType":"field_collection_item","\u0000*\u0000entityInfo":{"label":"Field collection item","label callback":"entity_class_label","uri callback":"entity_class_uri","entity class":"FieldCollectionItemEntity","controller class":"EntityAPIController","base table":"field_collection_item","revision table":"field_collection_item_revision","fieldable":true,"redirect":false,"entity keys":{"id":"item_id","revision":"revision_id","bundle":"field_name","uuid":"uuid"},"module":"field_collection","view modes":{"full":{"label":"Full content","custom settings":false},"token":{"label":"Tokens","custom settings":false}},"access callback":"field_collection_item_access","deletion callback":"field_collection_item_delete","metadata controller class":"FieldCollectionItemMetadataController","translation":{"entity_translation":{"class":"EntityTranslationFieldCollectionItemHandler","base path":"field-collection\/field-images-captions\/%field_collection_item","path wildcard":"%field_collection_item","default_scheme":"field_images_captions"}},"bundles":{"field_images_captions":{"label":"Field collection field_images_captions","admin":{"path":"admin\/structure\/field-collections\/%field_collection_field_name","real path":"admin\/structure\/field-collections\/field-images-captions","bundle argument":3,"access arguments":["administer field collections"]}}},"static cache":true,"field cache":true,"load hook":"field_collection_item_load","base table field types":{"item_id":"serial","revision_id":"int","field_name":"varchar","archived":"int","uuid":"char"},"schema_fields_sql":{"base table":["item_id","revision_id","field_name","archived","uuid"],"revision table":["revision_id","item_id"]},"token type":"field_collection_item","configuration":false,"uuid":true},"\u0000*\u0000idKey":"item_id","\u0000*\u0000nameKey":"item_id","\u0000*\u0000statusKey":"status","\u0000*\u0000defaultLabel":false,"\u0000*\u0000wrapper":null,"uuid":"a069b604-e09e-4e77-b095-19b21628bb9e","field_screen_image":{"und":[{"fid":"132","uid":"2","filename":"1. 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There are several components to the Anatomy Engine demo:\r\n1. Scene Builder\r\n2. Data Visualizer\r\n3. Anatomy Explorer\r\n4. Tutoring related components.\r\n\r\nTodd has ported many of these components to synapse, but not all. The main elements not ported (yet) are those which contact saved queries in the Query Integrator (QI) since we are not currently porting the QI to synapse. Todd has replaced some of these queries with direct queries to the FMA SPARQL endpoint, but not all. In particular 1)  Query fragments added in the Scene Builder return no results , 2) Data Visualizer queries retrieve no data, and 4) none of the tutoring components are ported. The screenshots below show the Scene Builder working with a query fragment (articulations of the sphenoid bone). The main tool of use in the ported version is the Anatomy Explorer.","summary":"","format":"filtered_html","safe_value":"\u003Cp\u003EThis is a partial port of Trond Nilsen\u0027s Anatomy Engine code, which was running at\u003Cbr \/\u003E\n\u003Ca href=\u0022http:\/\/ethmoid2.biostr.washington.edu:8080\/SIG-SceneGen\u0022\u003Ehttp:\/\/ethmoid2.biostr.washington.edu:8080\/SIG-SceneGen\u003C\/a\u003E. There are several components to the Anatomy Engine demo:\u003Cbr \/\u003E\n1. Scene Builder\u003Cbr \/\u003E\n2. Data Visualizer\u003Cbr \/\u003E\n3. Anatomy Explorer\u003Cbr \/\u003E\n4. Tutoring related components.\u003C\/p\u003E\n\u003Cp\u003ETodd has ported many of these components to synapse, but not all. The main elements not ported (yet) are those which contact saved queries in the Query Integrator (QI) since we are not currently porting the QI to synapse. Todd has replaced some of these queries with direct queries to the FMA SPARQL endpoint, but not all. In particular 1)  Query fragments added in the Scene Builder return no results , 2) Data Visualizer queries retrieve no data, and 4) none of the tutoring components are ported. The screenshots below show the Scene Builder working with a query fragment (articulations of the sphenoid bone). The main tool of use in the ported version is the Anatomy Explorer.\u003C\/p\u003E\n","safe_summary":""}]},"field_demo_url":{"und":[{"value":"http:\/\/synapse.si.washington.edu:8080\/SIG-SceneGen","format":"filtered_html","safe_value":"\u003Cp\u003E\u003Ca href=\u0022http:\/\/synapse.si.washington.edu:8080\/SIG-SceneGen\u0022\u003Ehttp:\/\/synapse.si.washington.edu:8080\/SIG-SceneGen\u003C\/a\u003E\u003C\/p\u003E\n"}]},"field_demo_status":{"und":[{"tid":"26"}]},"field_associated_project":{"und":[{"target_id":"79"}]},"field_runs_on":{"und":[{"target_id":"233"}]},"field_screenshots":[],"field_images_captions":{"und":[{"value":"70","revision_id":"70"},{"value":"71","revision_id":"71"},{"value":"72","revision_id":"72"},{"value":"73","revision_id":"73"},{"value":"74","revision_id":"74"},{"value":"75","revision_id":"75"},{"value":"76","revision_id":"76"},{"value":"77","revision_id":"77"},{"value":"78","revision_id":"78"},{"value":"79","revision_id":"79"},{"value":"80","revision_id":"80"},{"value":"81","revision_id":"81"},{"value":"82","revision_id":"82"}]},"field_software":{"und":[{"value":"http:\/\/resources.si.washington.edu\/viewvc\/svnroot\/SceneGen\/","format":"filtered_html","safe_value":"\u003Cp\u003E\u003Ca href=\u0022http:\/\/resources.si.washington.edu\/viewvc\/svnroot\/SceneGen\/\u0022\u003Ehttp:\/\/resources.si.washington.edu\/viewvc\/svnroot\/SceneGen\/\u003C\/a\u003E\u003C\/p\u003E\n"}]},"field_slides":[],"field_server_directory":{"und":[{"value":"\/var\/lib\/tomcat\/webapps\/SIG-SceneGen","format":null,"safe_value":"\/var\/lib\/tomcat\/webapps\/SIG-SceneGen"},{"value":"\/usr\/local\/scenegen","format":null,"safe_value":"\/usr\/local\/scenegen"}]},"field_short_description":[],"path":{"pathauto":"1"},"cid":"0","last_comment_timestamp":"1435788433","last_comment_name":null,"last_comment_uid":"1","comment_count":"0","name":"drupal","picture":"0","data":"b:0;","menu":{"link_title":"","mlid":0,"plid":0,"menu_name":"main-menu","weight":0,"options":[],"module":"menu","expanded":0,"hidden":0,"has_children":0,"customized":0,"parent_depth_limit":8},"#node_export_object":"1"},"\u0000*\u0000hostEntityId":163,"\u0000*\u0000hostEntityRevisionId":false,"\u0000*\u0000hostEntityType":"node","\u0000*\u0000langcode":"und","item_id":"71","revision_id":"71","field_name":"field_images_captions","default_revision":"1","archived":"0","\u0000*\u0000entityType":"field_collection_item","\u0000*\u0000entityInfo":{"label":"Field collection item","label callback":"entity_class_label","uri callback":"entity_class_uri","entity class":"FieldCollectionItemEntity","controller class":"EntityAPIController","base table":"field_collection_item","revision table":"field_collection_item_revision","fieldable":true,"redirect":false,"entity keys":{"id":"item_id","revision":"revision_id","bundle":"field_name","uuid":"uuid"},"module":"field_collection","view modes":{"full":{"label":"Full content","custom settings":false},"token":{"label":"Tokens","custom settings":false}},"access callback":"field_collection_item_access","deletion callback":"field_collection_item_delete","metadata controller class":"FieldCollectionItemMetadataController","translation":{"entity_translation":{"class":"EntityTranslationFieldCollectionItemHandler","base path":"field-collection\/field-images-captions\/%field_collection_item","path wildcard":"%field_collection_item","default_scheme":"field_images_captions"}},"bundles":{"field_images_captions":{"label":"Field collection field_images_captions","admin":{"path":"admin\/structure\/field-collections\/%field_collection_field_name","real path":"admin\/structure\/field-collections\/field-images-captions","bundle argument":3,"access arguments":["administer field collections"]}}},"static cache":true,"field cache":true,"load hook":"field_collection_item_load","base table field types":{"item_id":"serial","revision_id":"int","field_name":"varchar","archived":"int","uuid":"char"},"schema_fields_sql":{"base table":["item_id","revision_id","field_name","archived","uuid"],"revision table":["revision_id","item_id"]},"token type":"field_collection_item","configuration":false,"uuid":true},"\u0000*\u0000idKey":"item_id","\u0000*\u0000nameKey":"item_id","\u0000*\u0000statusKey":"status","\u0000*\u0000defaultLabel":false,"\u0000*\u0000wrapper":null,"uuid":"7f170932-a89a-4159-88d1-63f60684dbc6","field_screen_image":{"und":[{"fid":"133","uid":"2","filename":"2. 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There are several components to the Anatomy Engine demo:\r\n1. Scene Builder\r\n2. Data Visualizer\r\n3. Anatomy Explorer\r\n4. Tutoring related components.\r\n\r\nTodd has ported many of these components to synapse, but not all. The main elements not ported (yet) are those which contact saved queries in the Query Integrator (QI) since we are not currently porting the QI to synapse. Todd has replaced some of these queries with direct queries to the FMA SPARQL endpoint, but not all. In particular 1)  Query fragments added in the Scene Builder return no results , 2) Data Visualizer queries retrieve no data, and 4) none of the tutoring components are ported. The screenshots below show the Scene Builder working with a query fragment (articulations of the sphenoid bone). The main tool of use in the ported version is the Anatomy Explorer.","summary":"","format":"filtered_html","safe_value":"\u003Cp\u003EThis is a partial port of Trond Nilsen\u0027s Anatomy Engine code, which was running at\u003Cbr \/\u003E\n\u003Ca href=\u0022http:\/\/ethmoid2.biostr.washington.edu:8080\/SIG-SceneGen\u0022\u003Ehttp:\/\/ethmoid2.biostr.washington.edu:8080\/SIG-SceneGen\u003C\/a\u003E. There are several components to the Anatomy Engine demo:\u003Cbr \/\u003E\n1. Scene Builder\u003Cbr \/\u003E\n2. Data Visualizer\u003Cbr \/\u003E\n3. Anatomy Explorer\u003Cbr \/\u003E\n4. Tutoring related components.\u003C\/p\u003E\n\u003Cp\u003ETodd has ported many of these components to synapse, but not all. The main elements not ported (yet) are those which contact saved queries in the Query Integrator (QI) since we are not currently porting the QI to synapse. Todd has replaced some of these queries with direct queries to the FMA SPARQL endpoint, but not all. In particular 1)  Query fragments added in the Scene Builder return no results , 2) Data Visualizer queries retrieve no data, and 4) none of the tutoring components are ported. The screenshots below show the Scene Builder working with a query fragment (articulations of the sphenoid bone). 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Node export of Anatomy Engine Demo

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